For some reason, it seems that my assignment is considered to not have been submitted, although I have already done so.
"For some reason"=「何かの理由によって」
"it seems that"=「~のようである」
"my assignment is considered to not have been submitted"=「私の課題は提出されていないものとされている」
"although I have already done so."=「既に提出しているのにもかかわらず。」
ご参考になると良いです!